An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Detailed motif information

General information
Motif ID: mDDB0167111db004
Number of genes with the motif: 131
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position01234567
A 0% 0% 0% 17% 33% 0% 0% 0%
C100%100%100% 67% 17% 0% 0% 0%
G 0% 0% 0% 0% 0% 0% 0% 0%
T 0% 0% 0% 17% 50%100%100%100%
consensusCCCCWTTT

Matching with known binding sites

1. best match (score: 2.19)
with TRANSFAC motif: DROME$KO_01
bound by: Kr
       ACAGTCCCCTTTT
            ++++++++
            CCCCTTTT
               TA   
               AC
2. best match (score: 2.19)
with TRANSFAC motif: HS$PR264_04 - PR264/SC35 (splicing factor PR264/SC35)
bound by: c-Myb
       TCCAAGTTCACGCCCCTTTTTTG
                   ++++++++
                   CCCCTTTT
                      TA   
                      AC
3. best match (score: 2.19)
with TRANSFAC motif: MOUSE$BMG_06 - GLOB-BM (betaM-globin)
bound by: factor B1
       GAATCGCTTCCCCTTTTTTT
                ++++++++
                CCCCTTTT
                   TA   
                   AC
4. best match (score: 2.09)
with TRANSFAC motif: AS$AGL3_60 - artificial sequence.
bound by: AGL3
       GTAGCGCCCCATTTTTAGGGTTTAAGCTTG
             ++++|+++
             CCCCTTTT
                TA   
                AC
5. best match (score: 2.09)
with TRANSFAC motif: Y$DAL3_01 - DAL3 (ureidoglycolate hydrolase)
bound by: DAL80
       GCTTATCTTTCCCCATTTATTTGCCAATCCATCTTATCTTATCTGGCACTTTGTCTCAGG
                 ++++|+++
                 CCCCTTTT
                    TA   
                    AC
6. best match (score: 2.09)
with TRANSFAC motif: HS$APOB_18 - apoB (apolipoprotein B)

       CCATTCAGCTATACCCCATTTTCCAGGATATTTATGCATAGCGACCGTG
                    ++++|+++
                    CCCCTTTT
                       TA   
                       AC
7. best match (score: 2.09)
with TRANSFAC motif: HS$APOA2_13 - apoAII (apolipoprotein AII)

       CCCCCATTTCTCCAACT
        ++++|+++
        CCCCTTTT
           TA   
           AC
8. best match (score: 1.80)
with TRANSFAC motif: FY$MATP_01 - matP
bound by: ste11
       ATCACTAATGCTTTGTTCCCTCTTTCTTTGTTCCTTATGCG
                        +++||+++
                        CCCCTTTT
                           TA   
                           AC
9. best match (score: 1.69)
with TRANSFAC motif: DROME$KO_03
bound by: Kr
       ATTACCCTTTTT
           +++|++++
           CCCCTTTT
              TA   
              AC
10. best match (score: 1.69)
with TRANSFAC motif: JCV$JCV_06 - JCV (polyoma JC virus)

       TTCCCTTTTTTTTATATATACAG
         +++|++++
         CCCCTTTT
            TA   
            AC
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
AY007802 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00219 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00222 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00380 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00389 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00565 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00603 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00704 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_01091 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_01154 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_01578 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00002 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00575 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00651 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00758 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00822 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00904 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01190 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01268 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01353 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01380 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01623 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01632 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01714 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01725 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01735 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01798 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00202 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00417 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00438 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00516 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00614 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00817 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00965 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01025 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01085 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01155 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01157 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00270 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00275 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00626 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00915 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_01539 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00406 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00461 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00462 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00848 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00901 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_01153 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_01379 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_01383 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_02241 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_03308 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01170 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01294 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01380 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01390 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01412 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01441 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01470 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01491 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01502 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01719 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_02176 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_02449 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
Unc104 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
abcB3 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
ahhA dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
argS1 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
aslA dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
cap dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
cbpF dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
cln3 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
ctsD dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dhkC dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dio3 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dus4l dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dynD dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
ecd dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
esd dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
fadA dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
fhkB dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gcvH2 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gdt7 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gefK dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0216320 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0216331 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0216435 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0230002 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0230010 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0230090 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231561 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231578 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231589 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0232212 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233289 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233551 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233728 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233762 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233913 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0234181 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0234208 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0235170 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0235389 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0237482 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0237559 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0237628 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0238123 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gpaD dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gxcU dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
kif12 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
kil1 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
mcfS dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
mppB dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
nek2 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
pcp dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
phg1b dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
phr2AB dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
prmt1 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
prsA dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
rabG2 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
rcdK dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
rcdM dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
roco8 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
rpl35a dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
rps15a dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
sgmB dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
spf27 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
thoc6 dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
trrA dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
ubpA dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators