Detailed motif information for mDDB0167407db003

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Detailed motif information

General information

Motif ID: mDDB0167407db003
Number of genes with the motif: 147

Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.

Nucleotide frequency table

position	0	1	2	3	4	5	6
A	20%	0%	40%	0%	0%	0%	100%
C	0%	0%	0%	20%	0%	0%	0%
G	80%	80%	60%	80%	0%	100%	0%
T	0%	20%	0%	0%	100%	0%	0%
consensus	G	G	R	G	T	G	A

Matching with known binding sites

1. best match (score: 2.67)
with TRANSFAC motif: DROME$SO_05
bound by: toy

      CGGAATCGGTGAGGGGTGAATC
                  +++++++
                  GGGGTGA
                  ATAC

2. best match (score: 2.67)
with TRANSFAC motif: RAT$PTHR1_01 - PTHR1 (parathyroid hormone-related peptide)
bound by: RXR-alpha, VDR

      AGCAGCAAGGCTTCAGGGTGGAGAGGGGTGAGAAGTCCTAGCTGTAC
                              +++++++
                              GGGGTGA
                              ATAC

3. best match (score: 2.67)
with TRANSFAC motif: AS$ZAP1_34 - artificial sequence.
bound by: ZAP1

      GGATCCGGGGGGTGAGGCTCGGTCAACGAT
              +++++++
              GGGGTGA
              ATAC

4. best match (score: 2.67)
with TRANSFAC motif: AS$TGA1_36 - artificial sequence.
bound by: TGA1

      GTAAGGGGTGATGTAAGATA
          +++++++
          GGGGTGA
          ATAC

5. best match (score: 2.67)
with TRANSFAC motif: CHICK$H5_11 - H5 (histone 5)
bound by: GATA-1

      CCGTGCCACATGCGACGGGGTGATATCGGC
                      +++++++
                      GGGGTGA
                      ATAC

6. best match (score: 2.67)
with TRANSFAC motif: RAT$FAS_01 - FAS (fatty acid synthase)
bound by: SREBP-1

      GTGGGGTGAT
        +++++++
        GGGGTGA
        ATAC

7. best match (score: 2.67)
with TRANSFAC motif: AS$RAR_13 - artificial sequence.
bound by: RAR-alpha1, RXR-alpha

      TAAGGTCAATAAGGGGTGACTC
                  +++++++
                  GGGGTGA
                  ATAC

8. best match (score: 2.67)
with TRANSFAC motif: Y$DDR2_02 - DDR2 (DNA damage responsive)

      GTCCCCATAAGGGGTGAGAAAAGACA
                +++++++
                GGGGTGA
                ATAC

9. best match (score: 2.67)
with TRANSFAC motif: MTTF1$CONS - consensus.
bound by: mtTFA

      GTTGGGGGTGACTGTTAA
          +++++++
          GGGGTGA
          ATAC

10. best match (score: 2.67)
with TRANSFAC motif: AD$MLP_20 - MLP (major late promoter)
bound by: R1

      TGGGGTGAGTACTCCCTCTCAAAAGCGGGCA
       +++++++
       GGGGTGA
       ATAC

Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif

Link to results page	Link to detailed gene info
AY007802	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00255	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00257	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00544	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00557	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00568	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00899	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_00908	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_01069	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_01583	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_01745	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_01954	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC4V2_0_02099	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00246	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00556	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00689	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00691	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_00724	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01019	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01109	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01388	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01445	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01533	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01735	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01793	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01799	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BC5V2_0_01938	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00143	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00786	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01023	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01157	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01315	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
CSN5	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
CYP517A1	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
DD7-1	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00282	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00296	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00314	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00371	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00372	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00406	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00431	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00503	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00595	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_00596	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_01053	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_01250	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_01302	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_01835	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC1V2_0_01848	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00408	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00515	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00595	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00798	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00843	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_00924	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_01142	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_01566	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_01679	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_01810	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_02072	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_02175	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_02325	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_02401	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_02514	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_02701	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC2V2_0_03346	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_00799	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_00813	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01381	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01512	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01560	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01653	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_01783	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
JC3V2_0_02023	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
RPLP0	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
RPLP2	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
TAF13	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
acad8	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
alaS	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
cad2	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
carA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
cigA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
cofB	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
csbA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
csbB	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
csbC	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
cshA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dcd2B	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dhkL	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dmtA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dng1	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
dscE	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
eIF6	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
galK	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gbfA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gefC	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0216320	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0216403	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0220714	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0229296	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0229938	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0230005	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0230038	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0230059	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0230174	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231194	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231519	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231607	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231644	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231658	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0231722	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0232156	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0232404	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233080	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233289	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233723	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233742	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233914	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0233955	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0235188	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0235280	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0237590	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0237646	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0237834	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0237865	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
geneDDB0238126	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
gxcJ	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
hspC	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
lvsA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
mecr	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
mkcE	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
mlkA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
ncsA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
ndrJ	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
orfR1062	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
pcmA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
ppiA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
psaA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
racE	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
slob1	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
snpC	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
snwA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
sonA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
sppA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
vps41	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region
wasA	dictyBase Home >> Chromosome 2:69409..71417 >> Gene: udkD >> Regulatory Region

Query for a group of genes. Learn about how the analysis was done.


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