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Detailed motif information

General information
Motif ID: mDDB0185971db002
Number of genes with the motif: 54
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position012345678
A 40% 60% 60% 80% 20% 0% 0% 0% 20%
C 60% 40% 40% 20% 0% 0% 0% 0% 0%
G 0% 0% 0% 0% 80%100% 60%100% 80%
T 0% 0% 0% 0% 0% 0% 40% 0% 0%
consensusMMMAGGKGG

Matching with known binding sites

1. best match (score: 2.71)
with TRANSFAC motif: MOUSE$SRF_05 - SRF (Serum Response Factor)
bound by: Sp1
        CAACCCAGGGGGGCGGAACT
           +||++++++
           CAAAGGGGG
           ACCCA T A
2. best match (score: 2.53)
with TRANSFAC motif: AS$RAV1_03 - artificial sequence.
bound by: RAV1
        ACCACAGGGGGGAACCTGAGCCAAGATTTGTGG
          ++|++++++
          CAAAGGGGG
          ACCCA T A
3. best match (score: 2.06)
with TRANSFAC motif: CHICK$BHG_03 - GLOB-BH (betaH-globin)
bound by: NFI/CTF
        CTGTCCAAGGGGAAAAG
            +|++++++|
            CAAAGGGGG
            ACCCA T A
4. best match (score: 1.94)
with TRANSFAC motif: RAT$VASO_01 - vasopressin
bound by: AP-2
        TCCCCAGTGG
         +||||+|++
         CAAAGGGGG
         ACCCA T A
5. best match (score: 1.93)
with TRANSFAC motif: Y$PDI1_01 - PDI1 (protein disulfide isomerase)
bound by: HAC1
        ATGCTACACGGTGGCAAATTGG
             ||+|++|++
             CAAAGGGGG
             ACCCA T A
6. best match (score: 1.75)
with TRANSFAC motif: MOUSE$A21COL_08 - A2(1) COL (alpha2(I) collagen)

        CATCCTATTTAAAACAGGGGAATGG
                    |+|+++++|
                    CAAAGGGGG
                    ACCCA T A
7. best match (score: 1.74)
with TRANSFAC motif: RAT$EAI_05 - ELA1 (elastase I)
bound by: PTF1-beta, XPF-1
        AAGGCAGGGAAAAGCACAGGTGACATG
                      ++|+++|+|
                      CAAAGGGGG
                      ACCCA T A
8. best match (score: 1.73)
with TRANSFAC motif: DROME$HB_09 - hb (hunchback)
bound by: Hb
        TAGCTTAAAAAGGTGG
               |+++++|++
               CAAAGGGGG
               ACCCA T A
9. best match (score: 1.59)
with TRANSFAC motif: HS$GMCSF_16 - GM-CSF (granulocyte/macrophage colony stimulating factor)
bound by: AP-1, c-Fos, c-Jun
        CTGTAGGAAACAGGGGCTTGAGTCACTCCAG
               |++||++++
               CAAAGGGGG
               ACCCA T A
10. best match (score: 1.43)
with TRANSFAC motif: CHICK$CA2_01 - CAII (carbonic anhydrase II)
bound by: T3R-alpha, v-ErbA
        TTTCCTACAAGGTGAGTGAACG
              ||++++|+|
              CAAAGGGGG
              ACCCA T A
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
BC4V2_0_00562 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC4V2_0_00736 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC4V2_0_01091 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC5V2_0_00642 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC5V2_0_00651 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC5V2_0_00822 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC5V2_0_01190 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC5V2_0_01380 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC5V2_0_01690 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BC5V2_0_01698 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BEC6V2_0_00084 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
BEC6V2_0_00517 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
HSPC300 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC1V2_0_01222 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC2V2_0_00461 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC2V2_0_00462 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC2V2_0_02963 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC2V2_0_03308 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC3V2_0_00982 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC3V2_0_01294 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC3V2_0_01390 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC3V2_0_01412 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC3V2_0_01502 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC3V2_0_01693 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JC3V2_0_01719 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
JF2V1_0C0006_06891 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
aass dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
abcB7 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
ahhA dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
atg9 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
cap dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
carB dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
cct7 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
cigA dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
coaA dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
cprB dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
dhkK dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
dio3 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
esd dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
geneDDB0231561 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
geneDDB0231589 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
geneDDB0233551 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
geneDDB0233646 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
geneDDB0235170 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
geneDDB0237628 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
geneDDB0237834 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
mppB dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
nad11 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
pheSA dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
pks6 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
pyd3 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
rcdM dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
vatA dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
vps32 dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
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