An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Detailed motif information

General information
Motif ID: mDDB0201619db002
Number of genes with the motif: 57
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position012345678
A 0% 20% 20% 0% 0% 0% 0% 20% 0%
C100% 80% 60% 80% 80% 0% 80% 0% 0%
G 0% 0% 20% 20% 0% 40% 20% 40% 80%
T 0% 0% 0% 0% 20% 60% 0% 40% 20%
consensusCCCCCKCKG

Matching with known binding sites

1. best match (score: 2.94)
with TRANSFAC motif: PRV$IE_05 - IE (immediate-early)
bound by: NF-muE1, POU2F1
        CATTTGCATGCCCGGCCCCCGCGGCGGCCATCTTGCCCACTCGA
                       +++++|+|+
                       CCCCCTCTG
                        AGGTGGGT
                         A    A
2. best match (score: 2.78)
with TRANSFAC motif: HS$BBC3_01 - bbc3 (bcl-2 binding component 3)
bound by: p53
        CGCCCGCCGCGGACAAGTCAGGACTTGCAGGCGCGCGCCG
           ++|++|+|+
           CCCCCTCTG
            AGGTGGGT
             A    A
3. best match (score: 2.78)
with TRANSFAC motif: PRV$IE_05 - IE (immediate-early)
bound by: NF-muE1, POU2F1
        TCGAGTGGGCAAGATGGCCGCCGCGGGGGCCGGGCATGCAAATG
                         ++|++|+|+
                         CCCCCTCTG
                          AGGTGGGT
                           A    A
4. best match (score: 2.59)
with TRANSFAC motif: SV$SV40_63 - SV40 (simian virus 40)
bound by: T-Ag
        CAGAGGCCGAGGCCGCCTCGGCCTCTG
                    ++|++++|+
                    CCCCCTCTG
                     AGGTGGGT
                      A    A
5. best match (score: 2.57)
with TRANSFAC motif: PV$CH5B_01 - CH5B (chitinase5B)

        CTTCACGCTTGGGAAGCCGCCGGGGTGGGCCCGCAG
                        ++|++|||+
                        CCCCCTCTG
                         AGGTGGGT
                          A    A
6. best match (score: 2.57)
with TRANSFAC motif: AS$EGR1_01 - artificial sequence.
bound by: Egr-1, Sp1
        CCGGCGCGGGGGCGAGGGCGA
        ++||+|+|+
        CCCCCTCTG
         AGGTGGGT
          A    A
7. best match (score: 2.57)
with TRANSFAC motif: OAT$PHYA3_09 - phyA3 (phytochrome A3)
bound by: PF3
        TGACCGGCGCGGATGGG
           ++||+|+|+
           CCCCCTCTG
            AGGTGGGT
             A    A
8. best match (score: 2.57)
with TRANSFAC motif: MOUSE$EGR1_02 - Egr-1 (early growth response factor 1)
bound by: Egr-1, Egr-1, WT1
        CCCGGCGCGGGGGCGAGGGCG
         ++||+|+|+
         CCCCCTCTG
          AGGTGGGT
           A    A
9. best match (score: 2.54)
with TRANSFAC motif: Y$GAL1_14 - GAL1-10 (galactokinase-galactose epimerase)
bound by: QBP
        AGGGCTGTCACCCGCTCGGCGGCTTCTAA
                  +++|+++|+
                  CCCCCTCTG
                   AGGTGGGT
                    A    A
10. best match (score: 2.48)
with TRANSFAC motif: HS$MT2A_12 - MT-IIA (metallothionein IIA)
bound by: MTF-1
        CGCTGCCTGCACACGCCCCGCGCTGA
                        +++|+|+|+
                        CCCCCTCTG
                         AGGTGGGT
                          A    A
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
BC4V2_0_00255 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC4V2_0_00438 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC4V2_0_00562 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC4V2_0_00736 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC4V2_0_01091 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC4V2_0_01748 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC5V2_0_00642 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC5V2_0_00822 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC5V2_0_01190 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BC5V2_0_01698 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BEC6V2_0_00084 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BEC6V2_0_00442 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BEC6V2_0_01042 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
BEC6V2_0_01157 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
CSN4 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC1V2_0_00864 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC1V2_0_01222 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00308 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00337 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00338 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00340 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00341 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00343 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00390 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_00662 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_02272 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC2V2_0_02273 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC3V2_0_01412 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC3V2_0_02259 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC3V2_0_02341 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
JC3V2_0_02433 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
abcC9 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
allB2 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
atg8 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
carB dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
cct7 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
cprB dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
expl6 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0215296 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0220010 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0231749 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0232098 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0233502 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0233551 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0233633 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0233646 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
geneDDB0237841 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
hisS dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
mdhC dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
nad11 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
pheSA dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
plbE dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
pspD dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
pyd3 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
ranA dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
vatA dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
vps32 dictyBase Home >> Chromosome 4:660061..660974 >> Gene: DDB_G0283499 >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators