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Detailed motif information

General information
Motif ID: mDDB0230198db002
Number of genes with the motif: 66
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position012345678910
A 17% 50% 17% 33% 0% 33% 17% 33% 0% 0% 17%
C 0% 0% 17% 0% 0% 0% 50% 0% 0% 0% 0%
G 67% 0% 67% 50%100% 0% 33% 67%100% 83% 67%
T 17% 50% 0% 17% 0% 67% 0% 0% 0% 17% 17%
consensusGWGRGWSRGGG

Matching with known binding sites

1. best match (score: 1.92)
with TRANSFAC motif: RAT$NAT_05 - NAT (pineal serotonin N-acetyltransferase)

          CAGCCCTCAGCAGGATTGGGTCAGGGCCTGACTACC
                         |++++++|+++
                         GTGGGTCGGGG
                         TACA AGA TT
                         A AT  A   A
2. best match (score: 1.46)
with TRANSFAC motif: AS$TR_12 - artificial sequence.
bound by: T3R-beta1, T3R-beta1, T3R-beta2
          TGACCTGACAGTCAGGTCA
                ++||+++|++|
                GTGGGTCGGGG
                TACA AGA TT
                A AT  A   A
3. best match (score: 1.41)
with TRANSFAC motif: AS$TR_12 - artificial sequence.
bound by: T3R-beta1, T3R-beta1, T3R-beta2
          TGACCTGACTGTCAGGTCA
                ++||+++|++|
                GTGGGTCGGGG
                TACA AGA TT
                A AT  A   A
4. best match (score: 1.27)
with TRANSFAC motif: AS$ER_01 - artificial sequence (artificial ERE).
bound by: ER-alpha
          CTAGAAAGTCAGGTCACAGTGACCTGATCAAT
             ++||+++|++|
             GTGGGTCGGGG
             TACA AGA TT
             A AT  A   A
5. best match (score: 1.25)
with TRANSFAC motif: EBV$BSLF2_01 - BSLF2 + BMLF1 (BC-R2 promoter)
bound by: Zta
          TTCATGAGTCAGTGCTTC
             |++|+++|+|+
             GTGGGTCGGGG
             TACA AGA TT
             A AT  A   A
6. best match (score: 1.21)
with TRANSFAC motif: HS$MCAD_01 - MCAD (medium-chain acyl coenzyme A dehydrogenase)
bound by: RAR-beta, RXR-alpha
          CCTTCACCTTTACCCGGAGAGAAAGGTCAAACCC
                          +++|+|||++|
                          GTGGGTCGGGG
                          TACA AGA TT
                          A AT  A   A
7. best match (score: 0.50)
with TRANSFAC motif: HS$APOB_40 - apoB (apolipoprotein B)
bound by: HNF-3beta
          TAAAGTCAGTATT
          |+||+++|+||
          GTGGGTCGGGG
          TACA AGA TT
          A AT  A   A
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
BC4V2_0_00202 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC4V2_0_00568 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC4V2_0_00612 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC4V2_0_00680 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC4V2_0_00958 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC4V2_0_01385 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC4V2_0_01707 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC5V2_0_00057 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC5V2_0_00238 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC5V2_0_00885 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC5V2_0_01370 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BC5V2_0_01677 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BEC6V2_0_00279 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BEC6V2_0_01324 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
BFNV1_0C0014_07727 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
CRTF dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00017 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00125 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00256 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00278 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00296 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00312 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00418 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_00724 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_01582 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC1V2_0_01744 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC2V2_0_00033 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC2V2_0_00843 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC2V2_0_01483 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC2V2_0_03038 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC3V2_0_00803 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC3V2_0_01405 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC3V2_0_02019 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC3V2_0_02247 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC3V2_0_02281 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
JC3V2_0_02325 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
abcA5 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
abnB dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
ak1 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
alfA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
apm3 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
cudA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
erkA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
gbpD dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0220498 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0229936 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0231194 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0231406 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0233055 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0233397 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0233636 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0233646 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0237680 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
geneDDB0237900 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
gpaB dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
gxcU dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
hemA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
hmgL dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
orfR1062 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
osbA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
psvA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
rabG2 dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
rcnA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
sigG dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
srfC dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
suvA dictyBase Home >> Chromosome 4:498598..500602 >> Gene: DDB_G0283305 >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
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