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Citing dictyBase and the Dictyostelium Genome Project

About dictyBase

dictyBase Downloads

Gene Information (Updated monthly)
dictyBase ID, gene names, synonyms, and gene products	[view] [tab-delimited] [excel]
UniProt-DDBID mapping (Updated monthly)	[tab-delimited]
Curated Model History (Updated weekly)	[zip file (tab delimited)]

Dictyostelium Sequences and Annotations
BLAST databases: various sets of sequences in FASTA format (Updated weekly)	[download area]
Sequence and annotations in GFF3 format (Updated monthly)	[zip file]
Promoter sequences (5' flanking sequence up to next gene) (March 30, 2006)	[zip file]

Genes on AX3/AX4 Chromosome 2 Duplication (Updated June 26, 2008)
In strains AX3 and AX4 (the sequenced strain represented in dictyBase), chromosome 2 contains a duplication of approximately 750 kb, in which the region from base 2249564 to 3002134 is repeated between bases 3002514 and 3755084. This duplication is not found in AX2.	[view]

Mutant Phenotypes (Updated monthly)
All curated mutants	[view] [tab-delimited] [excel]
Null mutants	[view] [tab-delimited] [excel]
Overexpression mutants	[view] [tab-delimited] [excel]
Multiple mutants	[view] [tab-delimited] [excel]
Mutants with developmental defects	[view] [tab-delimited] [excel]
Other mutants	[view] [tab-delimited] [excel]
Insertional Mutants at BCM	[view] [tab-delimited] [excel]

Dictyostelium Anatomy Ontology (Gaudet, Williams, Fey and Chisholm, 2008)
Terms used to describe Dictyostelium	[overview] [OBO file]

Dictyostelium Phenotype Ontology (Updated monthly)
Terms used to annotate Dictyostelium Phenotypes	[view] [OBO file]

Protein Domains
InterPro domains of Dictyostelium proteins (July 2006)	[tab-delimited] [excel]
N-terminal myristoylation sites (July 2006)	[view] [tab-delimited] [excel]

GO Association File
Gene Ontology annotations (Updated weekly)	[gzip file]
GO annotations mapped to GO-slim.obo (August 2006)	[text file]

References
Franke Dictyostelium Reference Library: Complete Dictyostelium literature in EndNote and BiblX formats (Update info)	[download area]
List of PubMed IDs and associated genes (Updated monthly)	[tab-delimited] [excel]

Tools
Third party and other tools	[download area]


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